Being one of the philosophers who have published in and reviewed for both philosophy and science journals, I thought I would say a bit about how I think citation and reviewing conventions differ in philosophy and the sciences and where I think philosophy and the sciences could learn from each other in this regard. I must warn the reader that this is based on my own personal experiences and that I am making a lot generalizations that may not be justified. Also, I will be speaking of reviewing as opposed to refereeing, as the term 'reviewing' is used across the disciplines, whereas 'refereeing' is not. Scientists think 'refereeing' refers to the actions of a judge of a soccer match.
Double- and Triple-Anonymous Reviewing
Let 'double-anonymous reviewing' refer to a reviewing process in which the reviewers do not know the identity of the author, and the author does not know the identity of the reviewers. In a double-anonymous reviewing process the editor knows the identity of both author and reviewers. Let 'triple-anonymous reviewing' refer to a reviewing process in which the reviewers do not know the identity of the author, the author does not know the identity of the reviewers and the editor does not know the identity of the author but does know the identity of the reviewers. While not all top philosophy journals implement double- or triple-anonymous reviewing, it is fair to say that the majority do. Double-anonymous reviewing is standard. Triple-anonymous reviewing is also used but only in a couple of cases. Science journals, by contrast, do not generally use double- or triple-anonymous reviewing. The author does not know the identity of the reviewers but the reviewers nearly always know the identity of the author. On the face of it, this would seem to leave the process open to biases against minority groups and less experienced authors. I will touch on this question below.
Reviewer Selection
I believe that it is unheard of that a philosophy journal will ask the author for reviewer recommendations. This is very different in the sciences. Most science journals will ask for three reviewer suggestions and some allow the author to mention one reviewer that they would like to exclude. Of course, the editors can ignore those suggestions (and could even abuse the information about the excluded reviewer). However, from talking to editors of science journals it seems to me that editors often use the reviewers suggested by the author.
In my opinion, this is a terrible convention. It is bound to lead to a lot of articles being reviewed by the author's friends. It also makes it much easier for a senior person to publish a less than perfect paper than a junior person, as senior people are bound to have more favorable friends, or at least a better sense of who will be favorable and who won't be. It may also lead more junior people to question their own opinions when reviewing a senior person's paper.
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